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. The changes of thermodynamic parameters (enthalpy change ((Delta)H), entropy change ((Delta)S) and heat capacity change ((delta)C^sub p^)) corresponding to the transitions from N to MG (molten globule state) or MG to U (unfolded state), were summarized in the previous report (Nishii et al
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. Even today, the question has no definitive answer--though several fascinating lines of research suggest a genuinely Darwinian resolution is within sight
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. 8), 150 mM sodium chloride, 15% glycerol, 1 mM Ca^sup 2+^/Mn^sup 2+^, and 200 mM lactose) for 1 h with mild shaking in cold
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. (11), we obtained a scaling exponent of v = 0
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. In Protein Folding Handbook, Vol
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. The interaction is clearly different from the well-known categories of specific binding by lock-and-key or induced-fit binding, in which the complex in the bound state becomes essentially locked in one conformation
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. The BLG solutions were prepared using the osmotic stress technique
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. Fred Mellon for performing the mass spectrometry and Professor Lindsay Sawyer for advice on the literature
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. An interesting aspect of the late stages of the amyloidogenic assembly is provided by AFM data on insulin samples heated at 70°C for 20 (Fig
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. An additional example of tuned nonnative interactions guiding a folding pathway occurs in the rather larger Phage 22 Tailspike protein (Robinson and King, 1997), where a nonnative disulphide bond controls the folding search
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. Distributional centroids and ellipses were calculated by following the method of Kendall and Picquelle (1989), that is by weighting each station by the density of juveniles caught
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. It is generally accepted from thermodynamic and biochemical data that the β-sheet of gp120 that bridges the inner and outer domain of the gp120 core, the bridging sheet, is only fully formed and stabilized upon complexation with CD4 (Fig
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. For this, the atom-positional least-squares fitting of trajectory structures was performed using backbone atoms (N, Cα, and C') of the individual residues to exclude from the entropy contributions of collective motions of larger structural segments
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. Since the MG conformation is more flexible than a fully folded polypeptide, this could lead to better packing at the dimer interface, leading to more stable dimers
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. The Mn^sup 2+^ and Ca^sup 2+^ concentrations used were 5 mM in all the experiments unless specified otherwise
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. By a combined effort of thermal and chaotrope-induced denaturation we have been able to show the profound effect of glycosylation in the confomiational stability and oligomerization of the protein
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